Query a single kmer from chosen tissue data
Query a longer sequence
- split the sequence up into kmers of the chosen length (5,6,7) and run stats calculation (without plots) for each kmer
Compare two sequences ('reference vs variant')
- split each into kmers, calculate the stats as in workflow 2. for each sequence
Analyse multiple 'reference vs variant' pairs
- batch mode Workflow-3
In-silico mutate every base in a genomic locus

Accessory Tools:

Convert vcf format to Sasquatch input format

What's New?

October 2017:
Sasquatch: predicting the impact of regulatory SNPs on transcription...
July 2017:
A paper describing Sasquatch accepted for publication at Genome...