Tissue Repository:


We preprocessed the ENCODE DNase-seq catalog (human) and other publicly available data alongside in-house data to provide quick access to a large and diverse tissue repository.

For picking a suitable tissue of interest, search for a cell type that best reflects your cell context of interest. Because DNase-seq data can differ in their quality and, we provide some basic QC metrics for orientation. Per experiment we provide the total number of reads and the number of peaks called (* marks average numbers from merged replicates). Where peak calls were publicly available we used those or MACS2 (https://github.com/taoliu/MACS) peak calls otherwise (default parameters). We also show the number of reads within peaks and the average number of reads per peak (usually more is better). We found the best indication for a good dataset to be the footprint SFR score for a housekeeping transcription factor k-mer. NRF1 shows one of the strongest footprints in every tissue and thus gives a good estimate of expected footprint quality (again roughly more is better).

For publicly available data we also link to the GEO source. Abbreviations for sources are listed under notes. For detailed information about the ENCODE data visit https://www.encodeproject.org. To use your own DNase-seq data, please use our stand alone R-tool. If you would like to share your data please consider releasing the data and notifying us so that we can pre-process it and make the footprints available via this web page.




NameSourceCell typeTotal reads*Peaks*Reads in peaks*Read/PeakNRF1 SFRIDGEOReplicatesAlignmentPeak Call
DFCI LNCaP DHT 50U 50 100bp
prostate adenocarcinoma DHT treated
DNase 50U
size select 50-100bp
DFCILNCaP47175801.01051035816903.055.344.82706L_D_50U_50-100bpGSM12552681in-housein-house
DFCI LNCaP Vehicle 50U 50 100bp
prostate adenocarcinoma untreated
DNase 50U
size select 50-100bp
DFCILNCaP41442784.01017975875705.057.724.76569L_V_50U_50-100bpGSM12552771in-housein-house
DFCI MCF7 E2 50U 50 100bpDFCIMCF-719764434.0690145858886.084.893.87206MCF-7_E2_50U_50-100bpGSM12552801in-housein-house
ENCODE Duke 8988T merged
pancreas adenocarcinoma
Duke8988T51290647.51441482006160.513.922.4616wgEncodeEH001103GSM8166672ENCODEENCODE
ENCODE Duke A549 mergedDukeA54966783962.51177981449107.512.302.51174wgEncodeEH001095GSM8166492ENCODEENCODE
ENCODE Duke AoSMC merged
Serum-free media
Dukeaortic smooth muscle cells38709877.51217051026616.08.444.16567wgEncodeEH000601GSM8166382ENCODEENCODE
ENCODE Duke B cell adult merged
cell none
DukeB128221298.5116012522583245.052.72841ENCSR000EIIGSM10085882ENCODEENCODE
ENCODE Duke CD20plus RO01794 merged
RO01794
DukeCD20plus B cells63190248.51160122500181.521.552.71232wgEncodeEH003465GSM10085882ENCODEENCODE
ENCODE Duke CLL merged
chronic lymphocytic leukemia T-cell lymphocyte
DukeCLL56953022.71311681026191.07.823.09054wgEncodeEH001104GSM8166643ENCODEENCODE
ENCODE Duke Cerebellum OC mergedDukeprimary cerebellum166515826.510455151226530.5489.972.21951wgEncodeEH003481GSM10085832ENCODEENCODE
ENCODE Duke Cerebrum frontal OC merged
primary frozen cerebrum frontal tissue
DukeCerebrum frontal OC162318140.01359044669947.534.362.01288wgEncodeEH003480GSM10085782ENCODEENCODE
ENCODE Duke Chorion merged
outermost of two fetal membrane cells
DukeChorion54861609.01400032720611.519.432.38866wgEncodeEH000595GSM8166282ENCODEENCODE
ENCODE Duke Colo829 merged
malignant melanoma
DukeColo82966383643.01300041450670.511.163.73233wgEncodeEH002549GSM10085712ENCODEENCODE
ENCODE Duke ECC1 DMSO merged
epithelial cell line endometrium adenocarcinoma, DMSO treated
DukeECC-1112274175.01063012489241.523.421.86126wgEncodeEH002555GSM10085972ENCODEENCODE
ENCODE Duke ECC1 estradiol merged
epithelial cell line endometrium adenocarcinoma, estradiol treated
DukeECC-1128305051.51027544206841.040.941.71535wgEncodeEH002564GSM10085742ENCODEENCODE
ENCODE Duke FibroP merged
fibroblasts from indiv. with Parkinsonís, pooled from AG20443, AG08395 and AG08396
DukeFibroP38341015.31396861101994.77.893.86178wgEncodeEH000605GSM8166263ENCODEENCODE
ENCODE Duke Fibrobl GM03348 lenti MyoD merged
skin fibroblast lentivirus MyoD
DukeFibrobl166267906.01200075659309.047.162.61723wgEncodeEH003473GSM10085682ENCODEENCODE
ENCODE Duke Fibrobl GM03348 lenti control merged
skin fibroblast lentivirus control
DukeFibrobl156495480.51228134125457.033.592.98675wgEncodeEH003477GSM10085642ENCODEENCODE
ENCODE Duke Fibrobl GM03348 merged
skin fibroblast, untreated
DukeFibrobl154660636.01270494594358.036.162.56122wgEncodeEH003476GSM10085632ENCODEENCODE
ENCODE Duke Fibrobl merged
child fibroblast
DukeFibrobl30926088.0131990948359.07.194.75513wgEncodeEH000583GSM8166522ENCODEENCODE
ENCODE Duke Frontal Cortex OC mergedDukeprimary frontal cortex154367094.011096555336981.0498.692.04564wgEncodeEH003471GSM10085662ENCODEENCODE
ENCODE Duke GC B cell merged
Germinal center B cells (CD77+)
DukeGC B cell104829088.5892762526820.528.302.91922wgEncodeEH003474GSM10085792ENCODEENCODE
ENCODE Duke GM10248 merged
lymphoblastoid cell line
DukeGM10248170030985.01287793242890.025.182.31154wgEncodeEH003487GSM10085892ENCODEENCODE
ENCODE Duke GM10266 merged
lymphoblastoid cell line, De Lange phenotype
developmental delay
DukeGM10266167639051.51308713454479.026.402.23424wgEncodeEH003484GSM10085902ENCODEENCODE
ENCODE Duke GM12878 merged
B-lymphocyte
DukeGM1287860429705.71243061840257.714.803.41187wgEncodeEH000534GSM8166653 (3-5)ENCODEENCODE
ENCODE Duke GM12891 merged
B-lymphocyte, Hapmap
DukeGM1289133458437.01547221402326.59.062.28452wgEncodeEH000564GSM8166562ENCODEENCODE
ENCODE Duke GM12892 merged
B-lymphocyte, Hapmap
DukeGM1289234681274.01588611789909.011.272.30863wgEncodeEH000565GSM8166572ENCODEENCODE
ENCODE Duke GM13976 merged
B-lymphocyte, Hapmap
DukeGM13976167298216.51378024229834.030.701.98633wgEncodeEH003486GSM10085912ENCODEENCODE
ENCODE Duke GM13977 merged
B-lymphocyte, Hapmap
DukeGM13977177128035.51303864699663.536.042.2007wgEncodeEH003488GSM10085562ENCODEENCODE
ENCODE Duke GM18507 merged
B-lymphocyte, Hapmap
DukeGM1850714978699.7104837265605.72.533.95976wgEncodeEH000581GSM8166533 (3-5)ENCODEENCODE
ENCODE Duke GM19238 merged
B-lymphocyte, Hapmap
DukeGM1923834744061.51361901297673.09.532.7628wgEncodeEH000566GSM8166582ENCODEENCODE
ENCODE Duke GM19239 merged
B-lymphocyte, Hapmap
DukeGM1923933880949.51461601167323.07.992.53632wgEncodeEH000567GSM8166592ENCODEENCODE
ENCODE Duke GM19240 merged
B-lymphocyte, Hapmap
DukeGM1924033358169.0141734985531.06.952.93067wgEncodeEH000568GSM8166482ENCODEENCODE
ENCODE Duke GM20000 merged
lymphoblastoid cell line, De Lange phenotype
developmental delay
DukeGM20000166020093.51240754305595.034.702.09289wgEncodeEH003485GSM10085872ENCODEENCODE
ENCODE Duke Gliobla merged
Glioblastoma
DukeGliobla49019527.51182071325676.011.213.02663wgEncodeEH001100GSM8166682ENCODEENCODE
ENCODE Duke H1 hESC mergedDukeH1 hESC55151539.012903528894492.5223.932.01229wgEncodeEH000556GSM8166322ENCODEENCODE
ENCODE Duke H7 hESC merged
undifferentiated embryonic stem cells
DukeH7-hESC144432318.31339617297347.754.471.71906wgEncodeEH002554GSM10085963ENCODEENCODE
ENCODE Duke H9ES merged
embryonic stem cell (hESC) H9
DukeH9ES32805942.0139292815734.55.862.82683wgEncodeEH000594GSM8166292ENCODEENCODE
ENCODE Duke HMEC merged
mammary epithelial cells
DukeHMEC51703885.51587471387407.08.743.28733wgEncodeEH001101GSM8166692ENCODEENCODE
ENCODE Duke HPDE6 E6E7 merged
immortalized with E6E7 gene of HPV
Dukepancreatic duct cells55894578.01218499645500.079.162.82029wgEncodeEH001106GSM8166392ENCODEENCODE
ENCODE Duke HSMM FSHD merged
primary myoblast from Facioscapulohumeral Muscular Dystrophy (FSHD) patients
DukeHSMM FSHD48774165.31442751668569.011.573.24926wgEncodeEH002556GSM10085983ENCODEENCODE
ENCODE Duke HSMM emb merged
embryonic myoblast
DukeHSMM emb52289354.01273981133269.08.903.24915wgEncodeEH002550GSM10085922ENCODEENCODE
ENCODE Duke HSMM mergedDukeskeletal muscle myoblasts31121554.013695711386027.083.143.7707wgEncodeEH000584GSM8166503ENCODEENCODE
ENCODE Duke HSMMtube merged
skeletal muscle myotubes differentiated from the HSMM cell line
DukeHSMMtube41228098.01610571380030.08.573.19066wgEncodeEH000585GSM8166513ENCODEENCODE
ENCODE Duke HTR8svn merged
trophoblast (HTR-8/SVneo) cell line
DukeHTR8svn50781253.51137201188226.010.453.59761wgEncodeEH001105GSM8166442ENCODEENCODE
ENCODE Duke HUVEC merged
umbilical vein endothelial cells
DukeHUVEC15924266.0126675475712.53.763.05857wgEncodeEH000548GSM8166462ENCODEENCODE
ENCODE Duke HeLa S3 IFNa merged
IFN alpha treated 4h
DukeHeLa-S355174347.01725621403336.58.132.59301wgEncodeEH000577GSM8166332ENCODEENCODE
ENCODE Duke HeLa S3 merged
untreated
DukeHeLa-S318089289.0141147516692.33.662.90034wgEncodeEH000540GSM8166433ENCODEENCODE
ENCODE Duke Heart OC merged
primary frozen heart tissue
DukeHeart OC160751745.01249264994127.039.982.18257wgEncodeEH003479GSM10085592ENCODEENCODE
ENCODE Duke HepG2 merged
hepatocellular carcinoma
DukeHepG216946178.71159954698675.340.513.58229wgEncodeEH000537GSM8166623ENCODEENCODE
ENCODE Duke Hepatocytes mergedDukeprimary hepatocytes59489327.517187520113148.0117.022.24764wgEncodeEH001107GSM8166632ENCODEENCODE
ENCODE Duke Huh 7 merged
hepatocellular carcinoma
DukeHuh-753227498.51438541728117.012.012.45169wgEncodeEH001111GSM8166412ENCODEENCODE
ENCODE Duke Huh 7.5 merged
hepatocellular carcinoma, hepatocytes selected for high levels of hepatitis C replication
DukeHuh-7.555021279.51511162064438.013.662.58563wgEncodeEH001112GSM8166712ENCODEENCODE
ENCODE Duke IMR90 fetal merged
none fetal
DukeIMR-901518847991407834625244.532.852.38954ENCSR000EKGGSM10085862ENCODEENCODE
ENCODE Duke IMR90 merged
fetal lung fibroblast
DukeIMR90151884799.01407834625244.532.852.38954wgEncodeEH003482GSM10085862ENCODEENCODE
ENCODE Duke Ishikawa 4 OHTAM merged
endometrial adenocarcinoma treated with 4-OHTAM 100nM 30m
DukeIshikawa 4 OHTAM68130478.51053681749059.016.603.11714wgEncodeEH002552GSM10085942ENCODEENCODE
ENCODE Duke Ishikawa Estradiol merged
endometrial adenocarcinoma treated with Estradiol 10nM 30m
DukeIshikawa Estradiol70614631.51067851640273.015.363.25209wgEncodeEH002551GSM10085932ENCODEENCODE
ENCODE Duke K562 V2 merged
2nd version
DukeK562121940215.711200435545486.7317.362.6253wgEncodeEH000530GSM8166552ENCODEENCODE
ENCODE Duke K562 dimethyl sulfoxide adult merged
dimethyl_sulfoxide adult
DukeK562167803489126569553089443.702.06628ENCSR000EKOGSM10085802ENCODEENCODE
ENCODE Duke K562 vorinostat adult merged
vorinostat adult
DukeK5621677670371191824361392.66736.592.11676ENCSR000EKNGSM10085583ENCODEENCODE
ENCODE Duke LNCaP Methyltrienolone merged
prostate adenocarcinoma treated with Methyltrienolone
DukeLNCaP73383443.51409402935044.520.822.08495wgEncodeEH001096GSM8166342ENCODEENCODE
ENCODE Duke LNCaP merged
prostate adenocarcinoma
DukeLNCaP54541981.71440402681682.318.622.49175wgEncodeEH001097GSM8166373ENCODEENCODE
ENCODE Duke MCF7 mergedDukeMCF-744556946.51198078436243.570.423.12152wgEncodeEH000579GSM8166272ENCODEENCODE
ENCODE Duke Medullo D341 merged
Medulloblastoma cell line of neuron or neuron precursor origin
DukeMedullo D341149715063.01547035685492.036.751.78769wgEncodeEH000574GSM8166362ENCODEENCODE
ENCODE Duke Medullo merged
Medulloblastoma
DukeMedullo43230171.51518461693279.511.152.28835wgEncodeEH000574GSM8166362ENCODEENCODE
ENCODE Duke Mel 2183 merged
Melanoma Cell line
DukeMel 218362819874.51180791473533.012.483.49191wgEncodeEH002557GSM10085992ENCODEENCODE
ENCODE Duke Melano merged
epidermal melanocytes
DukeMelano75496701.01300531734200.013.333.45433wgEncodeEH000602GSM8166312ENCODEENCODE
ENCODE Duke Monocytes CD14plus mergedDukeMonocytes CD14+143519572.515942650083985.0314.152.21171wgEncodeEH003466GSM10085822ENCODEENCODE
ENCODE Duke Myometr merged
myometrial cells
DukeMyometr44497602.01465601106220.07.552.82823wgEncodeEH000603GSM8166302ENCODEENCODE
ENCODE Duke NHEK merged
epidermal keratinocytes
DukeNHEK20263955.0140505560663.53.993.27723wgEncodeEH000553GSM8166352ENCODEENCODE
ENCODE Duke Naive B cell merged
Naive B cells (IgD+) isolated from de-identified tonsillectomy
DukeNaive B cell151055908.0785183579022.545.582.6945wgEncodeEH003478GSM10085572ENCODEENCODE
ENCODE Duke Olf neurosphere merged
Human olfactory neurosphere-derived cells from mucosal biopsies
DukeOlf neurosphere120874946.3959735476772.757.072.71261wgEncodeEH003475GSM10085843ENCODEENCODE
ENCODE Duke Osteoblasts merged
osteoblasts
DukeOsteoblasts69209137.01513642482784.016.402.9927wgEncodeEH001098GSM8166543ENCODEENCODE
ENCODE Duke PancreaticIslets D merged
de-differntiated
DukePancreaticIslets39342733.013923813986928.0100.453.78607wgEncodeEH001102GSM8166663ENCODEENCODE
ENCODE Duke PancreaticIslets mergedDukePancreaticIslets26664368.31603936577168.341.012.85017wgEncodeEH000575GSM8166603ENCODEENCODE
ENCODE Duke ProgFib merged
fibroblasts, Hutchinson-Gilford progeria syndrome
DukeProgFib39836287.01267671388030.010.953.54389wgEncodeEH000576GSM8166612ENCODEENCODE
ENCODE Duke Psoas muscle OC merged
Primary frozen psoas muscle tissue
DukePsoas muscle OC170037299.01331256287522.547.232.14769wgEncodeEH003491GSM10085602ENCODEENCODE
ENCODE Duke RWPE1 merged
prostate epithelial
DukeRWPE164437213.01241721870655.015.072.87494wgEncodeEH002553GSM10085952ENCODEENCODE
ENCODE Duke SK N SH merged
neuroblastoma, untreated
DukeSK-N-SH143593369.51018555780087.056.751.98068wgEncodeEH003483GSM10085852ENCODEENCODE
ENCODE Duke Stellate merged
hepatic stellate cells
DukeStellate68524564.51297892322816.517.903.18748wgEncodeEH001108GSM8166722ENCODEENCODE
ENCODE Duke T cells CD4plus Th0 adult merged
Th0
DukeT cells CD4+60367475.512390725560616.0206.292.29757wgEncodeEH002562GSM10085722ENCODEENCODE
ENCODE Duke T cells CD4plus Th1 adult merged
Th1
DukeT cells CD4+59420971.513518119115409.0141.412.27739wgEncodeEH002563GSM10086042ENCODEENCODE
ENCODE Duke Urothelia UT189 merged
primary ureter cell culture of urothelial cells, treatment UT189 E. coli, (data version 2)
DukeUrothelia106885200.51068412387075.022.342.23393wgEncodeEH001114GSM10086062ENCODEENCODE
ENCODE Duke Urothelia merged
primary ureter cell culture of urothelial cells (data version 2)
DukeUrothelia103991982.51035662597114.525.082.20049wgEncodeEH001113GSM10086052ENCODEENCODE
ENCODE Duke germinal center merged
center none
Dukegerminal104829088.5892762526820.528.302.91922ENCSR000EIZGSM7015002ENCODEENCODE
ENCODE Duke iPS CWRU1 merged
iPS cells derived from MSC658 fibroblast
DukeiPS CWRU189175977.01361122682448.519.712.04303wgEncodeEH002560GSM10085702ENCODEENCODE
ENCODE Duke iPS NIHi11 merged
iPS cells derived from AG20443 fibroblast
DukeiPS NIHi11104271380.71349472824800.720.932.18413wgEncodeEH002561GSM10085693ENCODEENCODE
ENCODE Duke iPS NIHi7 merged
iPS cells derived from AG08395 fibroblast
DukeiPS NIHi7112897139.31348022388812.317.722.58907wgEncodeEH002558GSM10086003ENCODEENCODE
ENCODE Duke iPS merged
induced pluripotent stem cell derived from skin fibroblast
DukeiPS51836317.71613881914172.011.862.11087wgEncodeEH001110GSM8166423ENCODEENCODE
ENCODE Duke pHTE merged
primary tracheal epithelial cells
DukepHTE48025743.01540121867309.012.122.72588wgEncodeEH001099GSM8166472ENCODEENCODE
ENCODE Duke skin fibroblast child merged
fibroblast none
Dukeskin154660636127049459435836.162.51305ENCSR000EIRGSM10085642ENCODEENCODE
ENCODE Duke skin fibroblast doxycycline child merged
fibroblast doxycycline
Dukeskin166267906120007565930947.162.61723ENCSR000EITGSM10085682ENCODEENCODE
ENCODE UW A172 adult
none adult
UWA17289377422163749198622112.135.39456ENCSR932KWJ-2ENCODEENCODE
ENCODE UW A549 mergedUWA54916664356.559366386565.06.513.33309wgEncodeEH001180GSM7365062ENCODEENCODE
ENCODE UW A673 merged
none unknown
UWA6732449496911996836650524.533.314.85614ENCSR346JWH-2ENCODEENCODE
ENCODE UW ACHN adult merged
none adult
UWACHN364811249171029.5829612848.515.46331ENCSR257BGZ-2ENCODEENCODE
ENCODE UW AG04449 mergedUWfetal buttock/thigh fibroblast30404878.01651831003042.06.072.74917wgEncodeEH000505GSM736562, GSM7365902ENCODEENCODE
ENCODE UW AG04450 mergedUWfetal lung fibroblast31751018.01515391139711.57.522.91142wgEncodeEH000506GSM736563, GSM7365142ENCODEENCODE
ENCODE UW AG09309 mergedUWadult toe fibroblast38207290.01827681725011.09.442.84638wgEncodeEH000507GSM736551, GSM7366162ENCODEENCODE
ENCODE UW AG09319 mergedUWgum tissue fibroblasts28742376.5134592.51260984.09.373.22357wgEncodeEH000508GSM736619, GSM7365312ENCODEENCODE
ENCODE UW AG10803 mergedUWabdominal skin fibroblasts35436141.5176159.52095030.511.892.9333wgEncodeEH000509GSM736598, GSM7366332ENCODEENCODE
ENCODE UW Ammons horn adult
horn none
UWAmmon's339995654269891942477834.925.95779ENCSR584LUZ-1ENCODEENCODE
ENCODE UW AoAF mergedUWaortic adventitial fibroblast30158150.01694811209440.57.143.22104wgEncodeEH001161GSM736583, GSM7365052ENCODEENCODE
ENCODE UW BJ merged
skin fibroblast foreskin
UWBJ37907081.51651431549300.59.382.71046wgEncodeEH000487GSM736518, GSM7365962ENCODEENCODE
ENCODE UW BJ newborn merged
none newborn
UWBJ2198222882196451448039565.933.20238ENCSR240TPI-2ENCODEENCODE
ENCODE UW Be2C merged
neuroblastoma cell line
UWBe2-C48761808.0177365.52266948.012.782.96998wgEncodeEH001181GSM736508, GSM7366222ENCODEENCODE
ENCODE UW CD1c positive myeloid dendritic cell merged
myeloid dendritic
UWCD1c-positive272373689234359678450928.956.33029ENCSR373BIX-2ENCODEENCODE
ENCODE UW CD20plus RO01778 merged
RO01778
UWCD20plus B cells35699309.5107028.51225164.011.453.67442wgEncodeEH001884GSM7015002ENCODEENCODE
ENCODE UW CD34plus mobilized
hematopoietic progenitor cells
UWCD34+49756223.016394820828710.0127.042.96455wgEncodeEH001885GSM10247701ENCODEENCODE
ENCODE UW CD4plus Naive Wb11970640UWCD4+ naive sorted cells24083134.0822434541684.055.224.44906wgEncodeEH003027GSM10247891ENCODEENCODE
ENCODE UW CD4plus Naive Wb78495824UWCD4+ naive sorted cells20093286.0873032067721.023.684.93313wgEncodeEH003028GSM10247821ENCODEENCODE
ENCODE UW CMK
acute megakaryocytic leukemia cells
UWCMK31319078.01328411086630.08.183.04684wgEncodeEH000510GSM7366071ENCODEENCODE
ENCODE UW Caco 2 merged
colorectal adenocarcinoma
UWCaco-224943716.01140871337517.511.722.29615wgEncodeEH000486GSM736500, GSM7365872ENCODEENCODE
ENCODE UW Caki2 adult merged
none adult
UWCaki2134567792116263388345233.401.82332ENCSR515EWI-2ENCODEENCODE
ENCODE UW DGF CD4plus Naive Wb11970640
DGF
UWCD4+ naive sorted cells308906610.013487474262767.0550.612.42929wgEncodeEH003156GSM10145371ENCODEENCODE
ENCODE UW DGF H7 hESCUWH7 hESC302050785.041889997084777.0231.761.82026wgEncodeEH003156GSM10145371ENCODEENCODE
ENCODE UW DGF HEEpiCUWesophageal epithelial cells342975637.0292370119217466.0407.762.6211wgEncodeEH002454GSM10145111ENCODEENCODE
ENCODE UW DGF HSMMUWskeletal muscle myoblasts367269086.0312682144037800.0460.652.59709wgEncodeEH002450GSM10145141ENCODEENCODE
ENCODE UW DGF HepG2
hepatocellular carcinoma
UWHepG2168883956.014690549716318.0338.421.37497wgEncodeEH000476GSM6465591ENCODEENCODE
ENCODE UW DGF K562UWK562179970820.018718532991005.0176.251.84092wgEncodeEH000480GSM6465671ENCODEENCODE
ENCODE UW Daoy child merged
none child
UWDaoy1511997082273148292510.536.484.44415ENCSR346IHH-2ENCODEENCODE
ENCODE UW EH BJ hTert newborn merged
(BJ-hTert) none
UWEH361332307199449.523773707.5119.203.85643ENCSR548MMD-2ENCODEENCODE
ENCODE UW G401 child merged
none child
UWG401305861885184735.5929591850.326.0411ENCSR269SIA-2ENCODEENCODE
ENCODE UW GM04503 merged
adult monocygotic twin pair fibroblasts
UWGM0450335738276.0192188.51426054.57.422.88207wgEncodeEH002574GSM1024777, GSM10247802ENCODEENCODE
ENCODE UW GM04504 merged
adult monocygotic twin pair fibroblasts
UWGM0450436815833.01897671793659.09.452.98384wgEncodeEH002575GSM1024775, GSM10247762ENCODEENCODE
ENCODE UW GM06990 merged
B-lymphocyte, lymphoblastoid
UWGM0699021826632.091716925625.510.092.38581wgEncodeEH000481GSM736558, GSM7366352ENCODEENCODE
ENCODE UW GM12864
B-lymphocyte, Hapmap
UWGM1286429163780.01374741015710.07.393.77552wgEncodeEH001182GSM7365251ENCODEENCODE
ENCODE UW GM12865 merged
B-lymphocyte, lymphoblastoid,HapMap
UWGM1286535746189.01463611728331.011.812.87398wgEncodeEH000520GSM736512, GSM7365612ENCODEENCODE
ENCODE UW GM12878 merged
B-lymphocyte, Hapmap
UWGM1287823949710.51167744352537.037.274.27867wgEncodeEH000492GSM736496, GSM7366202ENCODEENCODE
ENCODE UW H1 hESCUWH1 hESC24431583.01505344309046.028.632.6219wgEncodeEH000496GSM7365821ENCODEENCODE
ENCODE UW H1 hESC embryonic v2
none embryonic
UWH1-hESC244315831505347224304.802.6219ENCSR000EMUGSM7365821ENCODEENCODE
ENCODE UW H4 adult
none adult
UWH4399783834158002755917347.844.3364ENCSR809CEA-2ENCODEENCODE
ENCODE UW H7 hESC Diff14d merged
Differentiated 14 days protocol A
UWH7-hESC34968261.0133677.5947083.57.082.95886wgEncodeEH002576GSM1024758, GSM10247592ENCODEENCODE
ENCODE UW H7 hESC Diff2d
Differentiated 2 days protocol A
UWH7-hESC24392212.0156579537762.03.434.57145wgEncodeEH002577GSM10247741ENCODEENCODE
ENCODE UW H7 hESC Diff5d merged
Differentiated 5 days protocol A
UWH7-hESC38509526.01959011104620.05.642.98104wgEncodeEH002578GSM1024754, GSM10247552ENCODEENCODE
ENCODE UW H7 hESC Diff9d
Differentiated 9 days protocol A
UWH7-hESC75675509.01931792577758.013.342.73475wgEncodeEH003019GSM10247781ENCODEENCODE
ENCODE UW H7 hESC merged
undifferentiated embryonic stem cells peakV2 for rep1
UWH7-hESC29261960.5239852.51615203.06.732.54111wgEncodeEH000511GSM736638, GSM7366102ENCODEENCODE
ENCODE UW H7 hESC v2 merged
none unknown
UWH7-hESC3020507854418051463921533.141.82089ENCSR000EMZGSM7366382ENCODEENCODE
ENCODE UW HA h merged
astrocytes-hippocampal
UWHA-h31888661.0187907827149.54.403.48513wgEncodeEH001191GSM736594, GSM7365352ENCODEENCODE
ENCODE UW HA sp merged
astrocytes spinal cord
UWHA-sp38632304.5182237810203.04.452.85539wgEncodeEH001183GSM736537, GSM7366252ENCODEENCODE
ENCODE UW HAEpiC merged
amniotic epithelial cells
UWHAEpiC32332599.0202893.52292121.011.302.55807wgEncodeEH000512GSM736631, GSM7366062ENCODEENCODE
ENCODE UW HAP 1 merged
none unknown
UWHAP-1158040446229391375518416.373.38965ENCSR620QNS-2ENCODEENCODE
ENCODE UW HAc merged
astrocytes-cerebellar
UWHAc39665065.0164848.51198223.57.273.18441wgEncodeEH001192GSM736586, GSM7365382ENCODEENCODE
ENCODE UW HBMEC merged
brain microvascular endothelial cells
UWHBMEC40269969.0184320.51360774.57.382.73715wgEncodeEH001178GSM736509, GSM7365542ENCODEENCODE
ENCODE UW HBVP
brain vascular pericytes
UWHBVP47747677.0209182182807.00.872.96606wgEncodeEH002579GSM10247501ENCODEENCODE
ENCODE UW HBVSMC merged
brain vascular smooth muscle cells
UWHBVSMC26678474.5160509703423.54.383.55655wgEncodeEH002580GSM1024768, GSM10247692ENCODEENCODE
ENCODE UW HCF merged
cardiac fibroblasts
UWHCF35600432.5170318.51877890.511.032.94936wgEncodeEH000513GSM736568, GSM7365402ENCODEENCODE
ENCODE UW HCFaa merged
cardiac fibroblasts- adult atrial
UWHCFaa33090891.01789822144303.511.982.98139wgEncodeEH001164GSM736494, GSM7366012ENCODEENCODE
ENCODE UW HCM merged
cardiac myocytes
UWHCM35094278.0177396.51913500.510.793.03469wgEncodeEH000519GSM736516, GSM7365042ENCODEENCODE
ENCODE UW HCPEpiC merged
choroid plexus epithelial cells
UWHCPEpiC30702752.51969521849782.59.392.85853wgEncodeEH000514GSM736569, GSM7365972ENCODEENCODE
ENCODE UW HCT 116 merged
colorectal carcinoma
UWHCT-11640459802.5113916.5922609.08.103.01098wgEncodeEH001162GSM736600, GSM7364932ENCODEENCODE
ENCODE UW HConF merged
conjunctival fibroblast
UWHConF40479406.5158795.51812218.511.413.10855wgEncodeEH001165GSM736547, GSM7365152ENCODEENCODE
ENCODE UW HEEpiC mergedUWesophageal epithelial cells36441901.519580611572952.559.102.69416wgEncodeEH000515GSM736585, GSM7365322ENCODEENCODE
ENCODE UW HFF Myc merged
foreskin fibroblast cells expressing canine cMyc
UWHFF-Myc32532847.0176226947666.55.383.12774wgEncodeEH001194GSM736524, GSM7366052ENCODEENCODE
ENCODE UW HFF merged
foreskin fibroblast
UWHFF36108764.5184144.51319753.07.173.06544wgEncodeEH001193GSM736602, GSM7365722ENCODEENCODE
ENCODE UW HGF merged
gingival fibroblasts
UWHGF27700151.01446091309692.59.062.95134wgEncodeEH000504GSM736576, GSM7365762ENCODEENCODE
ENCODE UW HIPEpiC merged
iris pigment epithelial cells
UWHIPEpiC34170261.5229046.51557630.06.802.42468wgEncodeEH001184GSM736589, GSM7366152ENCODEENCODE
ENCODE UW HL 60 adult merged
none adult
UWHL-6032606981.5152218154362810.142.81631ENCSR000ENUGSM7366262ENCODEENCODE
ENCODE UW HL 60 merged
promyelocytic leukemia cells
UWHL-6032606981.51522181543628.010.142.81631wgEncodeEH000489GSM736626, GSM7365952ENCODEENCODE
ENCODE UW HMEC merged
mammary epithelial cells
UWHMEC42966181.0143338.51155593.58.063.08024wgEncodeEH000503GSM736634, GSM7365522ENCODEENCODE
ENCODE UW HMF merged
mammary fibroblasts
UWHMF33995490.51848572081713.011.262.87274wgEncodeEH001166GSM736628, GSM7365412ENCODEENCODE
ENCODE UW HMVEC LBl merged
blood microvascular endothelial cells, lung-derived
UWHMVEC-LBl47103369.5162259.52011621.512.403.13233wgEncodeEH001163GSM736542, GSM7365112ENCODEENCODE
ENCODE UW HMVEC LLy merged
lymphatic microvascular endothelial cells, lung-derived
UWHMVEC-LLy45902646.5139093.52010625.514.463.10657wgEncodeEH001167GSM736507, GSM7366272ENCODEENCODE
ENCODE UW HMVEC dAd merged
adult dermal microvascular endothelial cells
UWHMVEC-dAd32878343.5113477643306.05.673.64821wgEncodeEH001889GSM1024745, GSM10247472ENCODEENCODE
ENCODE UW HMVEC dBl Ad merged
adult blood microvascular endothelial cells, dermal-derived
UWHMVEC-dBl-Ad45973919.01641432731234.516.642.81227wgEncodeEH001168GSM736609, GSM7365232ENCODEENCODE
ENCODE UW HMVEC dBl Neo merged
neonatal blood microvascular endothelial cells, dermal-derived
UWHMVEC-dBl-Neo59705717.5163649.53794134.523.183.06698wgEncodeEH001169GSM736571, GSM7365212ENCODEENCODE
ENCODE UW HMVEC dLy Ad merged
adult lymphatic microvascular endothelial cells, dermal-derive
UWHMVEC-dLy-Ad47100737.0130761.51757953.513.443.23798wgEncodeEH001170GSM736599, GSM7365912ENCODEENCODE
ENCODE UW HMVEC dLy Neo merged
neonatal lymphatic microvascular endothelial cells, dermal-derived
UWHMVEC-dLy-Neo47385413.0152673.51959999.012.842.95793wgEncodeEH001171GSM736577, GSM7365732ENCODEENCODE
ENCODE UW HMVEC dNeo merged
neonatal microvascular endothelial cells (single donor), dermal-derived
UWHMVEC-dNeo40767846.0143164.51677219.011.723.19781wgEncodeEH001172GSM736611, GSM7366242ENCODEENCODE
ENCODE UW HNPCEpiC merged
non-pigment ciliary epithelial cells
UWHNPCEpiC30290657.51864981223545.06.562.78976wgEncodeEH000516GSM736621, GSM7365502ENCODEENCODE
ENCODE UW HPAEC
pulmonary artery endothelial cells.
UWHPAEC33475651.0123786793200.06.412.86406wgEncodeEH001886GSM10247631ENCODEENCODE
ENCODE UW HPAF merged
pulmonary artery fibroblasts
UWHPAF43002468.51769192374690.513.422.88977wgEncodeEH001173GSM736555, GSM7366142ENCODEENCODE
ENCODE UW HPF merged
pulmonary fibroblasts isolated from lung tissue
UWHPF36217801.0159796.51650079.010.332.92442wgEncodeEH001174GSM736574, GSM7365032ENCODEENCODE
ENCODE UW HPdLF merged
periodontal ligament fibroblasts
UWHPdLF24887371.5163878.5911373.55.563.46014wgEncodeEH001175GSM736632, GSM7365282ENCODEENCODE
ENCODE UW HRCEpiC merged
renal cortical epithelial cells
UWHRCEpiC25262042.5187992.51601198.08.523.89805wgEncodeEH000493GSM736549, GSM7365572ENCODEENCODE
ENCODE UW HRE merged
renal epithelial cells
UWHRE26299958.51685251167757.56.933.36771wgEncodeEH000494GSM736527, GSM736542ENCODEENCODE
ENCODE UW HRGEC merged
renal glomerular endothelial cells
UWHRGEC22687123.5139600.5709438.55.083.59704wgEncodeEH001195-, GSM7364992ENCODEENCODE
ENCODE UW HRPEpiC merged
retinal pigment epithelial cells
UWHRPEpiC35408116.521501319358979.002.61711wgEncodeEH000517GSM736630, GSM7366232ENCODEENCODE
ENCODE UW HSMM mergedUWskeletal muscle myoblasts44949254.5226775.515004252.066.162.84298wgEncodeEH001185GSM736560, GSM7366392ENCODEENCODE
ENCODE UW HSMMtube merged
skeletal muscle myotubes differentiated from the HSMM cell line
UWHSMMtube33149274.5234516.51172254.55.003.01561wgEncodeEH001186 GSM736530, GSM7365302ENCODEENCODE
ENCODE UW HT 29 adult merged
none adult
UWHT-29358313650209850.51064473450.735.28714ENCSR814KRX-2ENCODEENCODE
ENCODE UW HUVEC merged
umbilical vein endothelial cells
UWHUVEC28927497.5126000825510.06.554.17697wgEncodeEH000488GSM736533, GSM7365752ENCODEENCODE
ENCODE UW HVMF merged
villous mesenchymal fibroblast cells
DukeHVMF23247967.01753971069184.06.103.15908wgEncodeEH001176GSM736534, GSM7364912ENCODEENCODE
ENCODE UW HeLa S3 merged
untreated
UWHeLa-S335334984.0129016.51363891.010.573.33623wgEncodeEH000495GSM736564, GSM7365102ENCODEENCODE
ENCODE UW HepG2 merged
hepatocellular carcinoma
UWHepG222338738.588328.56736386.076.272.04716wgEncodeEH000482GSM736637, GSM7366392ENCODEENCODE
ENCODE UW Jurkat merged
T lymphoblastoid derived from an acute T cell leukemia
UWJurkat50029120.560320534356.08.863.32733wgEncodeEH000497-, GSM7364922ENCODEENCODE
ENCODE UW K562 mergedUWK56233331917.5142742.56458378.545.244.39781wgEncodeEH000484GSM736566, GSM7366292ENCODEENCODE
ENCODE UW KBM 7 merged
none unknown
UWKBM-7139085924176248703960939.942.83454ENCSR426IEA-2ENCODEENCODE
ENCODE UW Karpas 422 adult merged
none adult
UWKarpas-422341624724149732.51251553283.595.05939ENCSR019JDO-2ENCODEENCODE
ENCODE UW L1 S8 merged
none unknown
UWL1-S8297567236173523823881947.485.84198ENCSR314EZY-2ENCODEENCODE
ENCODE UW L1 S8R merged
none unknown
UWL1-S8R3518002331655268759761.552.924.44784ENCSR746ZPP-2ENCODEENCODE
ENCODE UW LHCN M2 Diff4d merged
skeletal myoblasts
differentiated 4days
UWLHNC-M260179360.0217898.52148055.59.863.21883wgEncodeEH003006GSM1024771, GSM10247722ENCODEENCODE
ENCODE UW LHCN M2 merged
skeletal myoblasts
UWLHNC-M244779013.01935331880437.09.722.54073wgEncodeEH003005GSM1024786, GSM10247872ENCODEENCODE
ENCODE UW LNCaP merged
prostate adenocarcinoma
UWLNCaP49938655.51881001587057.08.443.30108wgEncodeEH001187-, GSM7366032ENCODEENCODE
ENCODE UW LoVo adult merged
none adult
UWLoVo213858954146195464810231.795.15034ENCSR503BEM-2ENCODEENCODE
ENCODE UW M059J merged
malignant glioblastoma
UWM059J57220269.5218279.53200776.014.662.92656wgEncodeEH002581-, GSM10247942ENCODEENCODE
ENCODE UW MCF7 Estradiol merged
treated with Estradiol 100nM 1hr
UWMCF-782220490227664.52792276.512.262.493wgEncodeEH003017GSM1024784, GSM10247832ENCODEENCODE
ENCODE UW MCF7 mergedUWMCF-744741067.514978910465191.569.873.54477wgEncodeEH003018GSM1024767, GSM7365882ENCODEENCODE
ENCODE UW MG63 child merged
none child
UWMG63219097041186101.58515283.545.764.35422ENCSR083STA-2ENCODEENCODE
ENCODE UW MM.1S adult merged
none adult
UWMM.1S368981259139140.5776623955.825.34721ENCSR458LIB-2ENCODEENCODE
ENCODE UW Monocytes CD14plus RO01746 merged
Align Rep1V2 + Rep2
UWMonocytes CD14+72821951.01556993268361.520.993.25593wgEncodeEH001196GSM10247911ENCODEENCODE
ENCODE UW NAMALWA child merged
none child
UWNAMALWA322787739133391805853560.415.18254ENCSR662HMO-2ENCODEENCODE
ENCODE UW NB4 merged
acute promyelocytic leukemia cell line
UWNB434825612.01388831661357.511.962.87256wgEncodeEH000498GSM736604, GSM7365292ENCODEENCODE
ENCODE UW NCI H226 merged
none unknown
UWNCI-H2262281797512570787730651.530.073.97232ENCSR265TEK-2ENCODEENCODE
ENCODE UW NH A merged
astrocytes
UWNH-A33465158.51745071865116.510.692.36039wgEncodeEH001179GSM736584, GSM7365842ENCODEENCODE
ENCODE UW NHBE RA merged
bronchial epithelial cells with retinoic acid
UWNHB-RA43548341.5227172.53739004.516.463.32044wgEncodeEH002582GSM1024781, GSM10247562ENCODEENCODE
ENCODE UW NHDF Ad merged
adult dermal fibroblasts
UWNHDF-Ad39113719.0182424.52219154.012.162.64931wgEncodeEH001177GSM736567, GSM7365202ENCODEENCODE
ENCODE UW NHDF neo merged
neonatal dermal fibroblasts
UWNHDF-neo33116940.0148322.5907910.06.122.71831wgEncodeEH001177GSM736498, GSM7365462ENCODEENCODE
ENCODE UW NHEK merged
epidermal keratinocytes
UWNHEK42166389.0156650821092.55.242.96039wgEncodeEH000499-, GSM7365562ENCODEENCODE
ENCODE UW NHLF merged
lung fibroblasts
UWNHLF36559905.5191812.51998113.510.422.36045wgEncodeEH000521GSM736612, GSM7365362ENCODEENCODE
ENCODE UW NT2 D1 merged
malignant pluripotent embryonal carcinoma
UWNT2-D130534816.0165768.5705108.04.252.86481wgEncodeEH001887GSM1024751, GSM10247952ENCODEENCODE
ENCODE UW OCI LY7 adult merged
none adult
UWOCI-LY7279226139146010.58642460.559.194.93088ENCSR489NAM-2ENCODEENCODE
ENCODE UW PANC 1 merged
pancreatic carcinoma
UWPANC-126640837.5115566.5752980.06.524.48169wgEncodeEH000500GSM736517, GSM7365192ENCODEENCODE
ENCODE UW PC 3 adult merged
none adult
UWPC-3244115243148685.57755821.552.163.25604ENCSR052AWE-2ENCODEENCODE
ENCODE UW PC 9 merged
none unknown
UWPC-9244115243148685.57755821.552.165.04769ENCSR940NLN-2ENCODEENCODE
ENCODE UW PrEC merged
prostate epithelial cell line
UWPrEC35574618.5163440993561.06.082.63559wgEncodeEH001888GSM1024742, GSM10247432ENCODEENCODE
ENCODE UW RCC 7860 adult merged
7860 none
UWRCC2215223851484745227470.535.213.28878ENCSR037PGI-2ENCODEENCODE
ENCODE UW RPMI 7951 merged
Human Skin Malignant Melanoma Cells
UWRPMI-795141609592.5165119.52156255.013.062.66385wgEncodeEH003007GSM1024779, GSM10247932ENCODEENCODE
ENCODE UW RPMI8226 adult merged
none adult
UWRPMI8226306897915.5179051.5940167252.514.71164ENCSR594NOE-2ENCODEENCODE
ENCODE UW RPTEC merged
renal proximal tubule epithelial cells
UWRPTEC36026340.0173020.51012228.05.852.64747wgEncodeEH001188GSM736543, GSM7365392ENCODEENCODE
ENCODE UW SAEC merged
small airway epithelial cells
UWSAEC24003500.01858671303138.07.014.4413wgEncodeEH000501-, GSM7366172ENCODEENCODE
ENCODE UW SJCRH30 merged
none unknown
UWSJCRH30217596561188376.59034559.547.965.1793ENCSR000FFJ-2ENCODEENCODE
ENCODE UW SJSA1 adult merged
none adult
UWSJSA1155677940129505.5379993829.342.12028ENCSR620WAR-2ENCODEENCODE
ENCODE UW SK N DZ child
none child
UWSK-N-DZ328019676156061616292139.495.49935ENCSR946MVP-2ENCODEENCODE
ENCODE UW SK N MC merged
euroepithelioma cell line derived from a metastatic supra-orbital human brain tumor
UWSK-N-MC27977354.5148545679750.54.583.50815wgEncodeEH001189GSM736522, GSM7365702ENCODEENCODE
ENCODE UW SK N SH RA merged
Neuroblastoma cell line, retinoid acid treated
UWSK N SH25046779.0101313.57498899.574.022.30244wgEncodeEH000485GSM736559, GSM7365782ENCODEENCODE
ENCODE UW SW480 adult merged
none adult
UWSW480185661800212464.54296841.520.223.20034ENCSR217SET-2ENCODEENCODE
ENCODE UW SkMC merged
skeletal muscle cells
UWSkMC30746789.52062722456200.511.912.71552wgEncodeEH000490GSM736593, GSM7364972ENCODEENCODE
ENCODE UW T 47D merged
epithelial cell line derived from a mammary ductal carcinoma.
UWT-47D55506628.0151921.52117822.513.942.94636wgEncodeEH002583GSM1024762, GSM10247612ENCODEENCODE
ENCODE UW Th1 Wb33676984
Th1 cells in vivo isolation
UWTh1 Wb3367698442020023.0109915895504.08.152.423wgEncodeEH003021GSM10247491ENCODEENCODE
ENCODE UW Th1 Wb54553204 merged
Th1 cells in vivo isolation, single, caucasian, normal subject donor
UWTh1 Wb5455320437957739.5100798.5820170.08.143.60308wgEncodeEH003022GSM1024753, GSM10247522ENCODEENCODE
ENCODE UW Th1 merged
primary Th1 T cells
UWTh156029925.51070311808429.016.904.93422wgEncodeEH000483GSM736592, GSM10247602ENCODEENCODE
ENCODE UW Th17
T helper cells expressing IL-17, primary pheresis of single normal subject
UWTh1718274006.077394426065.05.514.28834wgEncodeEH003020GSM10247901ENCODEENCODE
ENCODE UW Th2 Wb33676984
Th2 cells in vivo isolation, donor is Asian, female 26 year old, primary pheresis of single normal subject
UWTh2 Wb3367698428912841.0102779651227.06.343.91552wgEncodeEH003023GSM10247401ENCODEENCODE
ENCODE UW Th2 Wb54553204
Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject
UWTh2 Wb5455320443122486.01288552760801.021.432.62337wgEncodeEH003024GSM10247391ENCODEENCODE
ENCODE UW Th2 merged
primary Th2 T cells
UWTh246840311.0111057.51301785.511.722.64707wgEncodeEH000491GSM736502, GSM10247922ENCODEENCODE
ENCODE UW Treg Wb78495824
T regulatory cells in vivo isolation
UWTreg Wb7849582440015882.01257031474650.011.733.23316wgEncodeEH003025GSM10247441ENCODEENCODE
ENCODE UW Treg Wb83319432
T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject
UWTreg Wb8331943285202717.01600201391513.08.703.81183wgEncodeEH003026GSM10247411ENCODEENCODE
ENCODE UW WERI Rb 1 merged
retinoblastoma
UWWERI-Rb-140722521.5191832.51418180.07.393.49212wgEncodeEH001190GSM736495, GSM7366362ENCODEENCODE
ENCODE UW WI 38 4OHTAM merged
embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct, 4-OHTAM 20nM 72hr treatment
UWWI-3828031883.01855981141360.56.153.0001wgEncodeEH001198GSM736526, GSM7366132ENCODEENCODE
ENCODE UW WI 38 merged
embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct, no treatment
UWWI-3827180917.0156156.51213758.07.773.6656wgEncodeEH001197GSM736526, GSM7366132ENCODEENCODE
ENCODE UW adipocyte merged
none unknown
UWadipocyte187506305234456.59209312.539.284.89802ENCSR405TXU-2ENCODEENCODE
ENCODE UW adrenal gland adult
gland none
UWadrenal190627436138896307108622.114.65746ENCSR848XIY-1ENCODEENCODE
ENCODE UW amniotic epithelial cell merged
epithelial cell
UWamniotic2812380462812061857344166.052.01073ENCSR000ENDGSM7366312ENCODEENCODE
ENCODE UW amniotic stem cell fetal merged
stem cell
UWamniotic313352167174997.5466367226.656.21751ENCSR820WLP-2ENCODEENCODE
ENCODE UW astrocyte merged
none unknown
UWastrocyte2315890452553491012774639.662.06081ENCSR000EPMGSM7365842ENCODEENCODE
ENCODE UW bipolar spindle neuron adult merged
spindle neuron
UWbipolar275939571267219.5875079232.754.2721ENCSR626RVD-2ENCODEENCODE
ENCODE UW bone marrow HS27a
human marrow stromal cells
UWHS27a36180305.0163722877894.05.363.1574wgEncodeEH003029GSM10247851ENCODEENCODE
ENCODE UW brain fetal merged
none fetal
UWbrain177146245236215965419140.875.29624ENCSR475VQD-2ENCODEENCODE
ENCODE UW brain microvascular endothelial cell merged
microvascular endothelial
UWbrain40269969184320.51360774.57.382.73715ENCSR000ENEGSM7365542ENCODEENCODE
ENCODE UW bronchial epithelial cell merged
epithelial cell
UWbronchial2438384762722951268928146.602.92874ENCSR000EPXGSM7366172ENCODEENCODE
ENCODE UW caudate nucleus adult
nucleus none
UWcaudate351235062203188616384230.345.79092ENCSR015BGH-2ENCODEENCODE
ENCODE UW cell of skeletal muscle merged
of skeletal
UWcell54388696530590041381965135.281.85202ENCSR000EQAGSM7365932ENCODEENCODE
ENCODE UW cerebellar cortex adult
cortex none
UWcerebellar152854356140009360333525.742.69548ENCSR503HIB-2ENCODEENCODE
ENCODE UW choroid plexus epithelial cell merged
plexus epithelial
UWchoroid2539254922892231702409458.862.05119ENCSR000ENLGSM7365972ENCODEENCODE
ENCODE UW embryonic facial prominence fetal merged
facial prominence
UWembryonic1122990812365352109411.58.921.91583ENCSR435NHO-2ENCODEENCODE
ENCODE UW esophagus mucosa adult
mucosa none
UWesophagus221708766184898219509111.872.98696ENCSR579BNV-1ENCODEENCODE
ENCODE UW eye fetal merged
none fetal
UWeye371203963286022.514193907.549.635.5735ENCSR127PWK-1ENCODEENCODE
ENCODE UW female gonad adult
gonad none
UWfemale171144636176353187213910.623.69103ENCSR855DJV-1ENCODEENCODE
ENCODE UW fibroblast of arm adult merged
of arm
UWfibroblast311025496290985.519106704.565.663.29066ENCSR217TAW-2ENCODEENCODE
ENCODE UW fibroblast of dermis adult merged
of dermis
UWfibroblast2356501072847341842233964.702.14338ENCSR000EPOGSM7365672ENCODEENCODE
ENCODE UW fibroblast of gingiva adult merged
of gingiva
UWfibroblast28742376.5141306.513214399.353.20838ENCSR000EMAGSM7366192ENCODEENCODE
ENCODE UW fibroblast of mammary gland merged
of mammary
UWfibroblast3110004432543421499962058.972.0514ENCSR000ENWGSM7366282ENCODEENCODE
ENCODE UW fibroblast of pedal digit skin adult merged
of pedal
UWfibroblast19008867.582192753080.59.162.83759ENCSR000ELZGSM7366162ENCODEENCODE
ENCODE UW fibroblast of peridontal ligament merged
of peridontal
UWfibroblast24887371.5163878.5911373.55.563.46014ENCSR000EOIGSM7366322ENCODEENCODE
ENCODE UW fibroblast of pulmonary artery merged
of pulmonary
UWfibroblast2554704822400001378047457.422.15189ENCSR000EOHGSM7366142ENCODEENCODE
ENCODE UW fibroblast of the aortic adventitia merged
of the
UWfibroblast3310431312409071806668774.992.17119ENCSR000EMCGSM7365832ENCODEENCODE
ENCODE UW fibroblast of the conjunctiva merged
of the
UWfibroblast40479406.5158795.51812218.511.413.10855ENCSR000ENKGSM7365472ENCODEENCODE
ENCODE UW fibroblast of upper leg skin fetal merged
of upper
UWfibroblast3040487816518310030426.072.74917ENCSR000ELXGSM7365902ENCODEENCODE
ENCODE UW globus pallidus adult merged
pallidus none
UWglobus93628520196022.52910446.514.856.84442ENCSR771DAX-2ENCODEENCODE
ENCODE UW glomerular visceral epithelial cell child merged
visceral epithelial
UWglomerular161272607138024.55312915.538.493.9313ENCSR785BDQ-2ENCODEENCODE
ENCODE UW heart fetal merged
none fetal
UWheart144645887259740408555615.734.48238ENCSR749BWV-2ENCODEENCODE
ENCODE UW heart left ventricle fetal
left ventricle
UWheart183425982279296480137117.195.60623ENCSR285IHF-2ENCODEENCODE
ENCODE UW hematopoietic multipotent progenitor cell adult
multipotent progenitor
UWhematopoietic28804498285323638689874.869.72246ENCSR362JSZ-2ENCODEENCODE
ENCODE UW hematopoietic multipotent progenitor cell erythropoietin adult merged
multipotent progenitor
UWhematopoietic401840827130249.5831560363.845.00605ENCSR420NOA-2ENCODEENCODE
ENCODE UW hematopoietic multipotent progenitor cell kit ligand erythropoietin adult merged
multipotent progenitor
UWhematopoietic20186990717993710117507.556.234.24401ENCSR845CFB-2ENCODEENCODE
ENCODE UW hematopoietic multipotent progenitor cell kit ligand interleukin 3 hydrocortisone succinate erythropoietin adult merged
multipotent progenitor
UWhematopoietic246624211264016.51293644549.004.59879ENCSR564JUY-2ENCODEENCODE
ENCODE UW hepatocyte embryonic merged
none embryonic
UWhepatocyte402970807224625.51109130049.387.39235ENCSR364MFN-2ENCODEENCODE
ENCODE UW induced pluripotent stem cell adult merged
pluripotent stem
UWinduced2408244213117429554440.530.653.45858ENCSR004SUL-2ENCODEENCODE
ENCODE UW inferior parietal cortex adult
parietal cortex
UWinferior281768760277196609986622.018.55887ENCSR986YWZ-1ENCODEENCODE
ENCODE UW kidney epithelial cell merged
epithelial cell
UWkidney26299958.51820661264620.56.953.37464ENCSR000EOLGSM7365482ENCODEENCODE
ENCODE UW kidney fetal
none fetal
UWkidney224001344306171766939725.055.797ENCSR066WZJ-1ENCODEENCODE
ENCODE UW left kidney fetal
kidney none
UWleft282125641566558815845.632.06392ENCSR097BWW-1ENCODEENCODE
ENCODE UW limb fetal merged
none fetal
UWlimb182592128272884.53787978.513.882.71422ENCSR532CRI-2ENCODEENCODE
ENCODE UW lung fetal merged
none fetal
UWlung1999641682271085287554.523.286.19114ENCSR627NIF-2ENCODEENCODE
ENCODE UW mammary epithelial cell merged
epithelial cell
UWmammary42966181143338.51155593.58.063.08024ENCSR000ENVGSM7366342ENCODEENCODE
ENCODE UW midbrain adult merged
none adult
UWmidbrain418392053184538.5745591240.407.22494ENCSR706IDL-2ENCODEENCODE
ENCODE UW middle frontal gyrus adult merged
frontal gyrus
UWmiddle151036057175061.5216379412.368.56431ENCSR318PRQ-2ENCODEENCODE
ENCODE UW neural progenitor cell embryonic merged
progenitor cell
UWneural4492601552277801084484347.614.91048ENCSR963ALV-2ENCODEENCODE
ENCODE UW non pigmented ciliary epithelial cell merged
ciliary epithelial
UWnon-pigmented30290657.5192736.51265589.56.572.79278ENCSR000EOFGSM7366212ENCODEENCODE
ENCODE UW occipital lobe adult
lobe none
UWoccipital4862233762659371114098041.895.55491ENCSR859CZM-1ENCODEENCODE
ENCODE UW pancreas adult merged
none adult
UWpancreas246616871204274.5413292620.236.19282ENCSR228IKB-2ENCODEENCODE
ENCODE UW placenta fetal d101
none fetal
UWplacenta191244802240891456690618.964.73404ENCSR575VMI-1ENCODEENCODE
ENCODE UW placenta fetal d105
none fetal
UWplacenta206245502224389402722617.954.82575ENCSR782ONY-1ENCODEENCODE
ENCODE UW placenta fetal d53
none fetal
UWplacenta175823226290516497769817.133.95795ENCSR499IFY-1ENCODEENCODE
ENCODE UW pons adult
none adult
UWpons328179486225978543499024.056.99802ENCSR829MXU-1ENCODEENCODE
ENCODE UW prostate gland adult
gland none
UWprostate246904984144334204630614.182.62413ENCSR456SOX-1ENCODEENCODE
ENCODE UW putamen adult
none adult
UWputamen166000636219646253980011.567.06793ENCSR493VDS-1ENCODEENCODE
ENCODE UW retina fetal merged
none fetal
UWretina210758041258580.58181687.531.642.7576ENCSR474GZQ-2ENCODEENCODE
ENCODE UW retinal pigment epithelial cell merged
pigment epithelial
UWretinal35408116.521501319358979.002.61711ENCSR000EONGSM7366302ENCODEENCODE
ENCODE UW right kidney fetal
kidney none
UWright205607110265785476908417.941.88691ENCSR768OLL-1ENCODEENCODE
ENCODE UW right lobe of liver adult
lobe of
UWright253785916143707253535417.644.03655ENCSR174TIP-1ENCODEENCODE
ENCODE UW sigmoid colon adult
colon none
UWsigmoid14799916033412322660456.783.2689ENCSR907VOR-1ENCODEENCODE
ENCODE UW skeletal muscle tissue adult
muscle tissue
UWskeletal372073116150015362193024.145.19751ENCSR171ETY-1ENCODEENCODE
ENCODE UW spinal cord fetal
cord none
UWspinal102455630161514246076715.246.80197ENCSR910OQF-2ENCODEENCODE
ENCODE UW superior temporal gyrus adult
temporal gyrus
UWsuperior6231808142287811028194844.948.54874ENCSR382JUJ-1ENCODEENCODE
ENCODE UW testis adult
none adult
UWtestis23270266620469317569018.583.46013ENCSR475SYH-1ENCODEENCODE
ENCODE UW thyroid gland adult merged
gland none
UWthyroid229467514194851667848334.276.83178ENCSR158VAT-2ENCODEENCODE
ENCODE UW tongue fetal
none fetal
UWtongue3424903702798681474671952.696.16398ENCSR559WMK-1ENCODEENCODE
ENCODE UW trophoblast cell fetal merged
cell none
UWtrophoblast340731516229802852441837.094.41666ENCSR964MZQ-2ENCODEENCODE
ENCODE UW trophoblast cell fetal week21 merged
cell none
UWtrophoblast368637202234081.516865434.572.054.77673ENCSR121ZSL-2ENCODEENCODE
ENCODE UW trophoblast cell fetal week23
cell none
UWtrophoblast170910334247993730407429.454.99079ENCSR809LCE-1ENCODEENCODE
ENCODE UW uterus adult
none adult
UWuterus243492072177672311917717.564.38228ENCSR237WJY-1ENCODEENCODE
WIMM primary erythroid Fibach Fade8
Fibach Fade8
WIMMprimary erythroid271953344.02101214581287.0693.957.27833primary_erythroid_Fibach_Fade8-1in-housein-house (& MACS2)


* for merged replicates (average across reps)


NameSourceCell typeTotal reads*Peaks*Reads in peaks*Read/PeakNRF1 SFRIDGEOReplicatesAlignmentPeak Call
ENCODE UW ES CJ7 merged
ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993
UWES-CJ735660180160699.51394147.58.68wgEncodeEM001728GSM10141872ENCODEENCODE
ENCODE UW ES E14 merged
mouse embryonic stem cell line E14
UWES-E1430519940165298847436.55.13wgEncodeEM003417GSM10141542ENCODEENCODE
HHMI liDNase mESC 100cells
low input Dnase-seq 100 cells
HHMImESC7703221373562258986.05-GSM20298011in-housemacs2
HHMI liDNase mESC 30cells
low input Dnase-seq 30 cells
HHMImESC2820199281571090013.87-GSM20298021in-housemacs2
WTHG C57bl6 erythroblasts term diff rep1
terminally differentiated erythroblasts
WTHGerythroblasts--1in-housein-house


* for merged replicates (average across reps)


Source IDDescription
DFCIHe et al. 2014, Dana-Farber Cancer Institute
DukeENCODE; Crawford group, Duke University
HHMIHoward Hughes Medical Institute, Zhang lab, Falong et al 2016
UWENCODE; Stamatoyannopoulos group; University of Washington
UW_DGFENCODE Digital Genomic Footprinting; Stamatoyannopoulos group, University of Washington
WIMMHughes/Higgs groups, Weatherall Institute of Molecular Medicine
WTHGWellcome Trust center for Human Genetics, Weatherall Institute of Molecular Medicine, Hosseini et al 2013